Solution for the week of February 16, 2015:
To disable the pictures of the flasks, the line to comment out or remove is line 38 in simulation.c.
The -pg flag can be added to the CFLAGS line in the Makefile to enable compiling for gprof.
Compiling uses the same commands as usual: "make" to create the object files and executable file "make clean" to remove the object files and executable file
The command to generate a gmon.out is: ./ideal-gas
To run gprof with the gmon.out file, use the following command: gprof ideal-gas gmon.out
This reveals that the function taking the longest time is calculateAndPrintSimulationProperties(). This function would be a candidate for parallelism.
http://hpcuniversity.org/students/weeklyChallenge/92